Eukaryotic GeneMark.hmm^(1,2) (Reload this page)

References:

1Borodovsky M. and Lukashin A. (unpublished) 2Lomsadze A., Ter-Hovhannisyan V., Chernoff Y. and Borodovsky M., "Gene identification in novel eukaryotic genomes by self-training algorithm", Nucleic Acids Research, 2005, Vol. 33, No. 20, 6494-6506

Accuracy comparison

UPDATE October 2005. Added pre-built models of eukaryotic GeneMark.hmm ES-3.0 (E - eukaryotic; S - self-training; 3.0 - the version)

Listing of previous updates

Input Sequence

Title (optional): Sequence: Sequence File upload: Species: A.gambiae ES-3.0 A.thaliana ES-3.0 A.thaliana C.briggsae ES-3.0 C.elegans ES-3.0 C.intestinalis ES-3.0 C.reinhardtii ES-3.0 C.remanei ES-3.0 D.melanogaster ES-3.0 D.melanogaster G.gallus H.sapiens H.vulgare M.musculus M.truncatula ES-3.0 O.sativa T.aestivum T.gondii ES-3.0 Z.mays Model description

Output Options

Email Address: (required for graphical output or sequences longer than 400000 bp) Generate PDF graphics (screen) Generate PostScript graphics (email) Print GeneMark 2.4 predictions in addition to GeneMark.hmm predictions Translate predicted genes into protein

Run

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