MetaGeneMark for MetaGenome Gene Finding
version 1.0 | Heuristic 2010
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CODON USAGE DB
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Gene Prediction in Metagenomes and Novel Prokaryotes by Heuristic Approach
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Input Sequence(s)
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Title:
Sequence(s) in multi-FASTA format: (
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or upload a sequence file:
Program options
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Kingdom:
Mixture of bacteria and archaea
Model selection:
6-LBA: Di-codon frequencies fit by logistic regressions on GC content
C-3BA: Codon frequencies fit by order 3 polynomial regressions on GC content
Output Options
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Format:
GFF3
GeneMark.hmm
Nucleotide sequences of predicted genes
Translate predicted genes into proteins
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Stand-alone version:
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Reference:
Zhu W, Lomsadze A and Borodovsky M.
"
Ab initio
gene identification in metagenomic sequences."
Nucleic Acids Research
, 2010, Vol.38, No.12, e132, doi: 10.1093/nar/gkq275
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GeneMark